Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.
Identifieur interne : 000052 ( Main/Exploration ); précédent : 000051; suivant : 000053Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.
Auteurs : Steven Van Borm [Belgique] ; Toon Rosseel ; Didier Vangeluwe ; Frank Vandenbussche ; Thierry Van Den Berg ; Bénédicte LambrechtSource :
- Archives of virology [ 1432-8798 ] ; 2012.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ARN, Animaux, Belgique (épidémiologie), Charadriiformes (virologie), Grippe chez les oiseaux (diagnostic), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Phylogénie, Phylogéographie, Techniques d'amplification d'acides nucléiques, Variation génétique, Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification).
- MESH :
- diagnostic : Grippe chez les oiseaux.
- génétique : Virus de la grippe A.
- isolement et purification : Virus de la grippe A.
- virologie : Charadriiformes, Grippe chez les oiseaux.
- épidémiologie : Belgique, Grippe chez les oiseaux.
- Analyse de séquence d'ARN, Animaux, Phylogénie, Phylogéographie, Techniques d'amplification d'acides nucléiques, Variation génétique.
- Wicri :
- geographic : Belgique.
English descriptors
- KwdEn :
- Animals, Belgium (epidemiology), Charadriiformes (virology), Genetic Variation, Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza in Birds (diagnosis), Influenza in Birds (epidemiology), Influenza in Birds (virology), Nucleic Acid Amplification Techniques, Phylogeny, Phylogeography, Sequence Analysis, RNA.
- MESH :
- geographic , epidemiology : Belgium.
- diagnosis : Influenza in Birds.
- epidemiology : Influenza in Birds.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- virology : Charadriiformes, Influenza in Birds.
- Animals, Genetic Variation, Nucleic Acid Amplification Techniques, Phylogeny, Phylogeography, Sequence Analysis, RNA.
Abstract
Nine influenza viruses isolated from gulls and shorebirds in Belgium (2008-2010), including H3N8, H5N2, H6N1, H11N9, H13N6, H13N8, and H16N3 subtypes, were targeted using random amplification and next-generation sequencing. The gene segments of these viruses segregated into three phylogeographic lineage types: (1) segments circulating in waterfowl in Eurasia with sporadic introduction in other species and in the Americas ("Eurasian avian"), (2) segments circulating in American waterfowl with sporadic introduction to other species and regions ("American avian"), and (3) segments circulating exclusively in gulls and shorebirds and having increased connectivity between the two hemispheres ("Charadriiformes specific"). Notably, an H6N1 and an H5N2 isolated from L. argentatus had mainly Eurasian avian genes but shared a matrix segment of American avian origin (first documentation in European gulls of transhemispheric reassortment). These data support the growing evidence of an important role of Charadriiformes birds in the dynamic nature of avian influenza ecology.
DOI: 10.1007/s00705-012-1323-x
PubMed: 22580556
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The gene segments of these viruses segregated into three phylogeographic lineage types: (1) segments circulating in waterfowl in Eurasia with sporadic introduction in other species and in the Americas ("Eurasian avian"), (2) segments circulating in American waterfowl with sporadic introduction to other species and regions ("American avian"), and (3) segments circulating exclusively in gulls and shorebirds and having increased connectivity between the two hemispheres ("Charadriiformes specific"). Notably, an H6N1 and an H5N2 isolated from L. argentatus had mainly Eurasian avian genes but shared a matrix segment of American avian origin (first documentation in European gulls of transhemispheric reassortment). 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IdType="pubmed">22580556</ArticleId><ArticleId IdType="doi">10.1007/s00705-012-1323-x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Belgique</li></country></list><tree><noCountry><name sortKey="Lambrecht, Benedicte" sort="Lambrecht, Benedicte" uniqKey="Lambrecht B" first="Bénédicte" last="Lambrecht">Bénédicte Lambrecht</name><name sortKey="Rosseel, Toon" sort="Rosseel, Toon" uniqKey="Rosseel T" first="Toon" last="Rosseel">Toon Rosseel</name><name sortKey="Van Den Berg, Thierry" sort="Van Den Berg, Thierry" uniqKey="Van Den Berg T" first="Thierry" last="Van Den Berg">Thierry Van Den Berg</name><name sortKey="Vandenbussche, Frank" sort="Vandenbussche, Frank" uniqKey="Vandenbussche F" first="Frank" last="Vandenbussche">Frank Vandenbussche</name><name sortKey="Vangeluwe, Didier" sort="Vangeluwe, Didier" uniqKey="Vangeluwe D" first="Didier" last="Vangeluwe">Didier Vangeluwe</name></noCountry><country name="Belgique"><noRegion><name sortKey="Van Borm, Steven" sort="Van Borm, Steven" uniqKey="Van Borm S" first="Steven" last="Van Borm">Steven Van Borm</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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